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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.379890.1 | ||||||||
Common Name | Csa_6G303740, LOC101217058 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 140aa MW: 14978 Da PI: 7.4745 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 14 | 36 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Cucsa.379890.1 14 FVCKTCNREFSSFQALGGHRASH 36 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00075 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H Cucsa.379890.1 59 HECSICGVEFPVGQALGGHMRRH 81 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.08E-8 | 12 | 81 | No hit | No description |
Pfam | PF13912 | 8.1E-13 | 13 | 38 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 14 | 36 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 14 | 41 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 16 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.0E-11 | 58 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.616 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MADSSIFHHP PRVFVCKTCN REFSSFQALG GHRASHRKPK LSMSGDALCN SNQNKTKAHE 60 CSICGVEFPV GQALGGHMRR HRNSSPPSQA MIMTAQPVSD ESDSDCGVGG GVDLDLNLTP 120 LENDLVRLQL MAPPVGCFT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681918 | 1e-130 | LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020. | |||
GenBank | LN713265 | 1e-130 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148235.1 | 1e-100 | PREDICTED: zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 9e-30 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A0A0KEU7 | 9e-99 | A0A0A0KEU7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148235.1 | 2e-99 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 3e-32 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.379890.1 |
Entrez Gene | 101217058 |
Publications ? help Back to Top | |||
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