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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.378700.2 |
Common Name | Csa_3G748220, LOC101221983 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
HD-ZIP |
Protein Properties |
Length: 241aa MW: 27205.6 Da PI: 7.0603 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.378700.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.1 | 8.3e-20 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+ ++++eqle Le+ F+++ +++ +++++L+k+lgL+ rq+ vWFqNrRa++k
Cucsa.378700.2 66 KKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWK 119
45679************************************************9 PP
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2 | HD-ZIP_I/II | 119.7 | 1.6e-38 | 65 | 157 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekk+rls+eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +L++ l+e
Cucsa.378700.2 65 EKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 157
69**************************************************************************************98876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009965 | Biological Process | leaf morphogenesis |
GO:0010434 | Biological Process | bract formation |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MEWATGSFRP FVSRAPESSF GFLYNYNLEQ FQGVDVKHSA MAGASETVLQ GLVPGMDMNS 60 YGNLEKKKRL SSEQLESLER SFQEEIKLDP DRKQKLSKEL GLQPRQIAVW FQNRRARWKA 120 KQLEHLYDTL KQEFDAISRE KHKLQEEVMK LKSMLRELQA ARNQVSTVYT DLSGEETVES 180 TSVGAGCSSK PRPVAAAAAV AAANHYTTPP EQCNYVFNTE EYNPMSPAFW GSLPSSYHPQ 240 *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 113 | 121 | RRARWKAKQ |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM095652 | 0.0 | KM095652.1 Cucumis sativus multicellular trichome development class I homeodomain-leucine zipper transcription factor (Gl) mRNA, complete cds. |
Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Andres RJ, et al.
Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] - Vuolo F, et al.
LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]
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