PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 476aa MW: 52854.3 Da PI: 7.8707

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.378670.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.8e-19	157	243	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++e+ ++l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ s s++p+f+q+e Cucsa.378670.3 157 EWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GVSISHWPWFKQME 243 5***********************************777778899********************98.677889*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-21	155	245	No hit	No description
Gene3D	G3DSA:3.40.1160.10	2.6E-44	293	449	IPR001048	Aspartate/glutamate/uridylate kinase
SuperFamily	SSF53633	5.24E-32	298	449	IPR001048	Aspartate/glutamate/uridylate kinase
Pfam	PF00696	3.3E-10	301	449	IPR001048	Aspartate/glutamate/uridylate kinase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006221	Biological Process	pyrimidine nucleotide biosynthetic process
GO:0046939	Biological Process	nucleotide phosphorylation
GO:0005737	Cellular Component	cytoplasm
GO:0033862	Molecular Function	UMP kinase activity

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MASCDDDFSL LNDDHHHQHH HQSTTNHHHV PTPHHIHQSY TSHRFTPRSS SVHAPPQPSP 60 NQPAQPILAP SGSPKKIGVP IDEEEEEEDT EDYGDPAFCS SSFDNGDPNR LGVGVDVRVE 120 KRKDQSDELA EEGGSYTSYK RAKPSSSGGE YRKDREEWSD AAISCLLDAY TEKFTQLNRG 180 NLRGRDWEEV AATVSERCEK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG VSISHWPWFK 240 QMEQIVGNSL TMKVVSDEDR SVASSGNTPR ISKRYVLPTP NTAGQMNNIK PKAVSSPRWR 300 RVVFKISGTA LAGTGPNNID SKVAMAIARE VVMACRLGVE VAIVVGGRNF FCGDSWVTTT 360 GLDRCTAYQI GMMATVMNSI LLQSAIEKMG VQTRVQSAFM LQEVAEPYSR QRAIRHLEKG 420 RVVIFGGIGA GTGNPLFSTD TAAALRASES MTLLSANYSL FFLFSFYYFM HRHAL*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MASCDDDFSL LNDDHHHQHH HQSTTNHHHV PTPHHIHQSY TSHRFTPRSS SVHAPPQPSP  60
NQPAQPILAP SGSPKKIGVP IDEEEEEEDT EDYGDPAFCS SSFDNGDPNR LGVGVDVRVE  120
KRKDQSDELA EEGGSYTSYK RAKPSSSGGE YRKDREEWSD AAISCLLDAY TEKFTQLNRG  180
NLRGRDWEEV AATVSERCEK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG VSISHWPWFK  240
QMEQIVGNSL TMKVVSDEDR SVASSGNTPR ISKRYVLPTP NTAGQMNNIK PKAVSSPRWR  300
RVVFKISGTA LAGTGPNNID SKVAMAIARE VVMACRLGVE VAIVVGGRNF FCGDSWVTTT  360
GLDRCTAYQI GMMATVMNSI LLQSAIEKMG VQTRVQSAFM LQEVAEPYSR QRAIRHLEKG  420
RVVIFGGIGA GTGNPLFSTD TAAALRASES MTLLSANYSL FFLFSFYYFM HRHAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ek5_A	2e-42	293	449	3	155	Uridylate kinase
3ek5_B	2e-42	293	449	3	155	Uridylate kinase
3ek5_C	2e-42	293	449	3	155	Uridylate kinase
3ek5_D	2e-42	293	449	3	155	Uridylate kinase
3ek5_E	2e-42	293	449	3	155	Uridylate kinase
3ek5_F	2e-42	293	449	3	155	Uridylate kinase
3ek6_A	2e-42	293	449	3	155	Uridylate kinase
3ek6_B	2e-42	293	449	3	155	Uridylate kinase
3ek6_C	2e-42	293	449	3	155	Uridylate kinase
3ek6_D	2e-42	293	449	3	155	Uridylate kinase
3ek6_E	2e-42	293	449	3	155	Uridylate kinase
3ek6_F	2e-42	293	449	3	155	Uridylate kinase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00340	DAP	Transfer from AT3G10030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138004.1	0.0	PREDICTED: uncharacterized protein LOC101222460
TrEMBL	A0A0A0LAQ2	0.0	A0A0A0LAQ2_CUCSA; Uncharacterized protein
STRING	XP_004138004.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	1e-173	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.378670.3
Entrez Gene	101222460

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]