PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.378670.2
Common NameCsa_3G748250, LOC101222460
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 539aa    MW: 59378.5 Da    PI: 6.9204
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.378670.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.3e-19157243186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +L++a++e+ ++l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   s s++p+f+q+e
  Cucsa.378670.2 157 EWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GVSISHWPWFKQME 243
                     5*************************************777778899************************98.677889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-21155245No hitNo description
Gene3DG3DSA:3.40.1160.104.2E-73293531IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.925297532IPR015963Uridylate kinase, bacteria
SuperFamilySSF536334.58E-58298531IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.92E-125300532No hitNo description
PfamPF006966.3E-25301511IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MASCDDDFSL LNDDHHHQHH HQSTTNHHHV PTPHHIHQSY TSHRFTPRSS SVHAPPQPSP  60
NQPAQPILAP SGSPKKIGVP IDEEEEEEDT EDYGDPAFCS SSFDNGDPNR LGVGVDVRVE  120
KRKDQSDELA EEGGSYTSYK RAKPSSSGGE YRKDREEWSD AAISCLLDAY TEKFTQLNRG  180
NLRGRDWEEV AATVSERCEK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG VSISHWPWFK  240
QMEQIVGNSL TMKVVSDEDR SVASSGNTPR ISKRYVLPTP NTAGQMNNIK PKAVSSPRWR  300
RVVFKISGTA LAGTGPNNID SKVAMAIARE VVMACRLGVE VAIVVGGRNF FCGDSWVTTT  360
GLDRCTAYQI GMMATVMNSI LLQSAIEKMG VQTRVQSAFM LQEVAEPYSR QRAIRHLEKG  420
RVVIFGGIGA GTGNPLFSTD TAAALRASEI HAEAVLKGTN VDGVYDCNSQ DNNFTFKHIS  480
FRELVSRGAI SMDMTALTFC EENNLPVVVF NLLEPGNISK ALCGEQVGTL IDQNGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-632935313239Uridylate kinase
3ek5_B7e-632935313239Uridylate kinase
3ek5_C7e-632935313239Uridylate kinase
3ek5_D7e-632935313239Uridylate kinase
3ek5_E7e-632935313239Uridylate kinase
3ek5_F7e-632935313239Uridylate kinase
3ek6_A7e-632935313239Uridylate kinase
3ek6_B7e-632935313239Uridylate kinase
3ek6_C7e-632935313239Uridylate kinase
3ek6_D7e-632935313239Uridylate kinase
3ek6_E7e-632935313239Uridylate kinase
3ek6_F7e-632935313239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138004.10.0PREDICTED: uncharacterized protein LOC101222460
TrEMBLA0A0A0LAQ20.0A0A0A0LAQ2_CUCSA; Uncharacterized protein
STRINGXP_004138004.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]