PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 544aa MW: 59924.2 Da PI: 6.9204

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.378670.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.4e-19	157	243	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++e+ ++l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ s s++p+f+q+e Cucsa.378670.1 157 EWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GVSISHWPWFKQME 243 5***********************************777778899********************98.677889*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-21	155	245	No hit	No description
Gene3D	G3DSA:3.40.1160.10	1.8E-69	293	536	IPR001048	Aspartate/glutamate/uridylate kinase
Hamap	MF_01220_B	32.051	297	537	IPR015963	Uridylate kinase, bacteria
SuperFamily	SSF53633	8.25E-55	298	536	IPR001048	Aspartate/glutamate/uridylate kinase
CDD	cd04254	1.57E-122	300	537	No hit	No description
Pfam	PF00696	1.7E-21	301	516	IPR001048	Aspartate/glutamate/uridylate kinase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006221	Biological Process	pyrimidine nucleotide biosynthetic process
GO:0046939	Biological Process	nucleotide phosphorylation
GO:0005737	Cellular Component	cytoplasm
GO:0033862	Molecular Function	UMP kinase activity

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MASCDDDFSL LNDDHHHQHH HQSTTNHHHV PTPHHIHQSY TSHRFTPRSS SVHAPPQPSP 60 NQPAQPILAP SGSPKKIGVP IDEEEEEEDT EDYGDPAFCS SSFDNGDPNR LGVGVDVRVE 120 KRKDQSDELA EEGGSYTSYK RAKPSSSGGE YRKDREEWSD AAISCLLDAY TEKFTQLNRG 180 NLRGRDWEEV AATVSERCEK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG VSISHWPWFK 240 QMEQIVGNSL TMKVVSDEDR SVASSGNTPR ISKRYVLPTP NTAGQMNNIK PKAVSSPRWR 300 RVVFKISGTA LAGTGPNNID SKVAMAIARE VVMACRLGVE VAIVVGGRNF FCGDSWVTTT 360 GLDRCTAYQI GMMATVMNSI LLQSAIEKMG VQTRVQSAFM LQEVAEPYSR QRAIRHLEKG 420 RVVIFGGIGA GTGNPLFSTD TAAALRASES MTLLIHAEAV LKGTNVDGVY DCNSQDNNFT 480 FKHISFRELV SRGAISMDMT ALTFCEENNL PVVVFNLLEP GNISKALCGE QVGTLIDQNG 540 RIS*

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MASCDDDFSL LNDDHHHQHH HQSTTNHHHV PTPHHIHQSY TSHRFTPRSS SVHAPPQPSP  60
NQPAQPILAP SGSPKKIGVP IDEEEEEEDT EDYGDPAFCS SSFDNGDPNR LGVGVDVRVE  120
KRKDQSDELA EEGGSYTSYK RAKPSSSGGE YRKDREEWSD AAISCLLDAY TEKFTQLNRG  180
NLRGRDWEEV AATVSERCEK QSKSVEQCKN KVDNLKKRYK LERHRMSNGG VSISHWPWFK  240
QMEQIVGNSL TMKVVSDEDR SVASSGNTPR ISKRYVLPTP NTAGQMNNIK PKAVSSPRWR  300
RVVFKISGTA LAGTGPNNID SKVAMAIARE VVMACRLGVE VAIVVGGRNF FCGDSWVTTT  360
GLDRCTAYQI GMMATVMNSI LLQSAIEKMG VQTRVQSAFM LQEVAEPYSR QRAIRHLEKG  420
RVVIFGGIGA GTGNPLFSTD TAAALRASES MTLLIHAEAV LKGTNVDGVY DCNSQDNNFT  480
FKHISFRELV SRGAISMDMT ALTFCEENNL PVVVFNLLEP GNISKALCGE QVGTLIDQNG  540
RIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ek5_A	1e-60	293	536	3	239	Uridylate kinase
3ek5_B	1e-60	293	536	3	239	Uridylate kinase
3ek5_C	1e-60	293	536	3	239	Uridylate kinase
3ek5_D	1e-60	293	536	3	239	Uridylate kinase
3ek5_E	1e-60	293	536	3	239	Uridylate kinase
3ek5_F	1e-60	293	536	3	239	Uridylate kinase
3ek6_A	1e-60	293	536	3	239	Uridylate kinase
3ek6_B	1e-60	293	536	3	239	Uridylate kinase
3ek6_C	1e-60	293	536	3	239	Uridylate kinase
3ek6_D	1e-60	293	536	3	239	Uridylate kinase
3ek6_E	1e-60	293	536	3	239	Uridylate kinase
3ek6_F	1e-60	293	536	3	239	Uridylate kinase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00340	DAP	Transfer from AT3G10030	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138004.1	0.0	PREDICTED: uncharacterized protein LOC101222460
TrEMBL	A0A0A0LAQ2	0.0	A0A0A0LAQ2_CUCSA; Uncharacterized protein
STRING	XP_004138004.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4062	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.378670.1
Entrez Gene	101222460

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]