PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 319aa MW: 34605.5 Da PI: 4.4348

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.378600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	291	314	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+++F + L++H + H Cucsa.378600.1 291 FSCKTCNRTFGSETALQSHTKAkH 314 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0019	291	314	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.5E-5	291	314	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.84	291	318	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	293	314	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEFWGAEVKV GEPLLVSPGE EKILHLSQAC LGESKSKGSE PVVLYVKVGN QKLVLGTLSS 60 EKFPQVSFDL VFDKEFELSH NWKNGSVHFT GYTSLLPEEE ESTYTDSEED FPLAVTDNGK 120 PEPEPEPKKD AKPDTSGTKK KVQIVEPSKV ASNSNIDSKK NKDSSDEDDD EDEESTDNEN 180 ENGGEEDDSD DDENESSGVD SEDSDEDSDD SLEEDEQTPK KAEASKKRPL DSANKTPAPD 240 KKAKLVTPQK TDGKKGVAHV ATPHPSKKAG KMAAANDKNK QQTPKSANAA FSCKTCNRTF 300 GSETALQSHT KAKHTADK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	6e-97	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	6e-97	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137868.1	0.0	PREDICTED: histone deacetylase HDT1
TrEMBL	A0A0A0LEE5	0.0	A0A0A0LEE5_CUCSA; Uncharacterized protein
STRING	XP_004137868.1	0.0	(Cucumis sativus)
STRING	XP_004161249.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-36	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Cucsa.378600.1
Entrez Gene	101207572

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]