PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 205aa MW: 22620.8 Da PI: 8.4827

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.378450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.8	2.7e-13	36	85	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr++ +g+Wv+e+r p +k+ +f++g+f +++ Aa a++ +++++ge Cucsa.378450.1 36 IYKGVRQR--NGKWVCELRRP---NKKSSFWVGTFCSPKRAAIAYDVVALAIKGE 85 69*975..6*****8...347********************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.55E-18	35	93	No hit	No description
Pfam	PF00847	8.6E-9	35	85	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.699	36	92	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-14	36	92	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.7E-21	36	93	IPR001471	AP2/ERF domain
SMART	SM00380	6.3E-15	36	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSSSSSSSTN DHLPPPTTVA KRKAGRKKFQ ETRHPIYKGV RQRNGKWVCE LRRPNKKSSF 60 WVGTFCSPKR AAIAYDVVAL AIKGESVPLN FPNFAHSFPR VMSSSSSISD IRAMAIKTAE 120 TFTSGDILTP LSLSSPSSLS LCSLMSEEKV VGPNYFWDEE EVFNMPAIIA GMAEGLIITP 180 PGMKKEFDWE DSENTIELSL WSHE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ900769	0.0	JQ900769.1 Cucumis sativus CBF3 protein (CBF3) mRNA, complete cds.
GenBank	KT737743	0.0	KT737743.1 Cucumis melo CRT/DRE-binding factor 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001267604.1	1e-150	uncharacterized protein LOC101209920
TrEMBL	A0A140DCV7	1e-148	A0A140DCV7_CUCME; CRT/DRE-binding factor 3
TrEMBL	I3WEU3	1e-148	I3WEU3_CUCSA; CBF3 protein
STRING	XP_004167927.1	1e-149	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	2e-37	C-repeat/DRE binding factor 1

Link Out ? help Back to Top
Phytozome	Cucsa.378450.1
Entrez Gene	101209920

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]