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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.378420.1 | ||||||||
Common Name | Csa_3G751470, LOC101203628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GRF | ||||||||
Protein Properties | Length: 417aa MW: 45258.9 Da PI: 8.5783 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.8 | 5.9e-26 | 150 | 194 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+ Cucsa.378420.1 150 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVET 194 79****************************************986 PP | |||||||
2 | QLQ | 45.2 | 2.8e-16 | 77 | 112 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+aaQ q+L+ Q+l+++y++a++ vPpeLl i+k Cucsa.378420.1 77 YFSAAQRQELELQALIFRYMIAGAAVPPELLHLIKK 112 7******************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.6E-7 | 76 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.662 | 77 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.0E-11 | 77 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.192 | 150 | 194 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.5E-22 | 151 | 193 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MDFDLKQCRK QRESESDEHQ NSSKISKFFP QQNPLNPSSS SSSSSSPVLP LFVPSKTSNT 60 LSAFSDSSST LPRMLGYFSA AQRQELELQA LIFRYMIAGA AVPPELLHLI KKSLLSSTTA 120 PLFLHHPLQH FPHYPTSLLQ AGYWGKAAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH 180 MHRGRNRSRK PVETATNNAA TTAGGSGSGG GCSISSNSNR GGGGGRPFLT VESGNYFSMC 240 EQTPSVDLLH LNQGSCSNSL SENKNFYQSH KEPSTGDVKP DGHILRHFFD DWPRSENDGC 300 GNDNTNNVNQ RMNSTSASAT SLSISMPSLT SDVSLKLSTG GSSDRGSDHH NHQNGNVDRE 360 QHTHLNWAAG WAATQMASMG GPLAEALRSA NNSSLPTSVL HQLQRTTNSE ASFIST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138010.2 | 0.0 | PREDICTED: growth-regulating factor 3-like | ||||
TrEMBL | A0A0A0LEG1 | 0.0 | A0A0A0LEG1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004165500.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 8e-56 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.378420.1 |
Entrez Gene | 101203628 |
Publications ? help Back to Top | |||
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