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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.374330.3 | ||||||||
Common Name | Csa_5G135350, LOC101216110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 534aa MW: 57769.1 Da PI: 5.0644 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 350 | 398 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Cucsa.374330.3 350 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 398 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.95E-11 | 345 | 402 | No hit | No description |
SuperFamily | SSF47459 | 8.37E-17 | 345 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.523 | 347 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 348 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-6 | 350 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 353 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MNGKDEFEVE NRTSDPMSIS SAWQFAAPNL TNESVGFDST GNPSVVSNGD LGVSSCPSTS 60 MSNLFTPALL NHHTESQNSG FCTTFNEQNS IVTSNTTLVD GEDLNSLRSN GDTRTLGMDW 120 NQQNPWMKGV FSGNVPGIFP PNLSQLPADS AFIERAARFS CFNNGVFGAP PAGPFGISDS 180 LGIHSGGGFR RQEVISRNGV SKDVSLPMEL EAEEKSPPKN EKDSEMSQDR AKQGCVGESG 240 NDSDEAGFSG GQDEQCTMGG TMTEPSTEGL CFKKRKRGEQ NVGLGQVKEA PQQINETAKN 300 GAFNQQKGGQ NPSSTTSKPA GKQGKQDSQP SDAPKEEYIH VRARRGQATN SHSLAERVRR 360 EKISERMRLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE 420 ELLTKEFIQS KAGPSLFGFP PDMPVPYLPQ HSSHHGLIPP CLPTMGSSPD LLRRAINSQL 480 TSLVGGFKEP VQLPNRWENE LHNVVPMNFD VSAPSSGQDV DGSNPQCNTR AEL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149484.2 | 0.0 | PREDICTED: transcription factor bHLH49-like | ||||
TrEMBL | A0A0A0KLP9 | 0.0 | A0A0A0KLP9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166054.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 5e-90 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.374330.3 |
Entrez Gene | 101216110 |
Publications ? help Back to Top | |||
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