PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.374330.2

Common Name

Csa_5G135350, LOC101216110

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 534aa MW: 57769.1 Da PI: 5.0644

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.374330.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	350	398	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Cucsa.374330.2 350 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 398 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.95E-11	345	402	No hit	No description
SuperFamily	SSF47459	8.37E-17	345	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.523	347	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	348	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	350	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	353	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MNGKDEFEVE NRTSDPMSIS SAWQFAAPNL TNESVGFDST GNPSVVSNGD LGVSSCPSTS 60 MSNLFTPALL NHHTESQNSG FCTTFNEQNS IVTSNTTLVD GEDLNSLRSN GDTRTLGMDW 120 NQQNPWMKGV FSGNVPGIFP PNLSQLPADS AFIERAARFS CFNNGVFGAP PAGPFGISDS 180 LGIHSGGGFR RQEVISRNGV SKDVSLPMEL EAEEKSPPKN EKDSEMSQDR AKQGCVGESG 240 NDSDEAGFSG GQDEQCTMGG TMTEPSTEGL CFKKRKRGEQ NVGLGQVKEA PQQINETAKN 300 GAFNQQKGGQ NPSSTTSKPA GKQGKQDSQP SDAPKEEYIH VRARRGQATN SHSLAERVRR 360 EKISERMRLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE 420 ELLTKEFIQS KAGPSLFGFP PDMPVPYLPQ HSSHHGLIPP CLPTMGSSPD LLRRAINSQL 480 TSLVGGFKEP VQLPNRWENE LHNVVPMNFD VSAPSSGQDV DGSNPQCNTR AEL*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MNGKDEFEVE NRTSDPMSIS SAWQFAAPNL TNESVGFDST GNPSVVSNGD LGVSSCPSTS  60
MSNLFTPALL NHHTESQNSG FCTTFNEQNS IVTSNTTLVD GEDLNSLRSN GDTRTLGMDW  120
NQQNPWMKGV FSGNVPGIFP PNLSQLPADS AFIERAARFS CFNNGVFGAP PAGPFGISDS  180
LGIHSGGGFR RQEVISRNGV SKDVSLPMEL EAEEKSPPKN EKDSEMSQDR AKQGCVGESG  240
NDSDEAGFSG GQDEQCTMGG TMTEPSTEGL CFKKRKRGEQ NVGLGQVKEA PQQINETAKN  300
GAFNQQKGGQ NPSSTTSKPA GKQGKQDSQP SDAPKEEYIH VRARRGQATN SHSLAERVRR  360
EKISERMRLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNIE  420
ELLTKEFIQS KAGPSLFGFP PDMPVPYLPQ HSSHHGLIPP CLPTMGSSPD LLRRAINSQL  480
TSLVGGFKEP VQLPNRWENE LHNVVPMNFD VSAPSSGQDV DGSNPQCNTR AEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149484.2	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A0A0KLP9	0.0	A0A0A0KLP9_CUCSA; Uncharacterized protein
STRING	XP_004166054.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	5e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.374330.2
Entrez Gene	101216110

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]