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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.373320.1 | ||||||||
Common Name | Csa_5G289630, LOC101218453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 139aa MW: 15289 Da PI: 10.562 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.6e-06 | 17 | 39 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF++ L H+r+H Cucsa.373320.1 17 HECSICKKSFKSAKALGGHMRVH 39 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.25E-6 | 15 | 41 | No hit | No description |
Pfam | PF13912 | 1.3E-9 | 17 | 39 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.8E-4 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 17 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.616 | 17 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MNLEKQKSGG SHSTSWHECS ICKKSFKSAK ALGGHMRVHN TGEIDAKLKQ SSLGPISTDL 60 RWVVPSAIAE GSSRDRNRGK GKKVQELQLF SQKPSKLKKK QSDEKAGGQS SQHDNVDNEL 120 DLELRLGSNP KKSTPTIFX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140464.1 | 8e-97 | PREDICTED: probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A0A0KR10 | 2e-95 | A0A0A0KR10_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156143.1 | 3e-95 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31539 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 3e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.373320.1 |
Entrez Gene | 101218453 |
Publications ? help Back to Top | |||
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