PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 160aa MW: 17779 Da PI: 9.8382

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.367300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.7e-17	12	61	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++aa l+g Cucsa.367300.1 12 QFKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDAAVFHLRG 61 79***99.******9...336********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.86E-19	11	70	No hit	No description
PROSITE profile	PS51032	21.562	12	69	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-29	12	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.31E-20	12	70	IPR016177	DNA-binding domain
SMART	SM00380	3.7E-33	12	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	13	24	IPR001471	AP2/ERF domain
Pfam	PF00847	2.6E-10	13	61	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	51	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MKDRKEEKKS KQFKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSSPVAAAR AYDAAVFHLR 60 GPTARLNFPD FLTTTVDRAS SFPLSAAAVR KIAAEVGAQV DALESSRRHS SDQSCSLNPT 120 KLRCCSYSCS SGFSDRVDLN KFPDPEDSDG DCVSTHWTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-15	9	69	2	63	ATERF1
3gcc_A	5e-15	9	69	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681913	0.0	LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149688.1	1e-115	PREDICTED: ethylene-responsive transcription factor ERF011-like
Swissprot	O22174	1e-52	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBL	A0A0A0LLV5	1e-113	A0A0A0LLV5_CUCSA; Uncharacterized protein
STRING	XP_004149688.1	1e-114	(Cucumis sativus)
STRING	XP_004168033.1	1e-114	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1290	32	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	9e-48	DREB and EAR motif protein 3

Link Out ? help Back to Top
Phytozome	Cucsa.367300.1
Entrez Gene	101209150

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171]