PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.366830.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 153aa    MW: 16986.4 Da    PI: 7.4594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.366830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-1965149191
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f++ l++s+v ++ ++ lp  f++++   ++++ t+tlede gr ++vk+i  k++    l++GW++F  a++L egD++vF+l+g ++f+
  Cucsa.366830.1  65 FVQSLVRSHVASLFLMGLPGAFCKSYL--PARDSTMTLEDEAGRHFQVKYIAHKTG----LSAGWRQFSAAHKLLEGDVLVFQLVGPTKFK 149
                     88999********************94..345669***************655555....************************9977763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2057150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2159151IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-2463150No hitNo description
SMARTSM010194.1E-1665151IPR003340B3 DNA binding domain
PfamPF023626.2E-1765149IPR003340B3 DNA binding domain
PROSITE profilePS5086313.15565152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
YSCKELLTSN GATFSFSPIV NHDYCCFEQN KAAFDEQCSP GEFKSSAVMR ALEVRSNLEQ  60
EFPSFVQSLV RSHVASLFLM GLPGAFCKSY LPARDSTMTL EDEAGRHFQV KYIAHKTGLS  120
AGWRQFSAAH KLLEGDVLVF QLVGPTKFKV IY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819131e-114LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132651e-114LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148056.13e-85PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_011649348.12e-85PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A0A0LLY86e-84A0A0A0LLY8_CUCSA; Uncharacterized protein
STRINGXP_004148056.11e-84(Cucumis sativus)
STRINGXP_004161736.11e-84(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-30B3 family protein