![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.366500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 290aa MW: 33809.9 Da PI: 9.9681 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.2e-14 | 20 | 118 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgr.sefel 92 ffkv + ++lk + l +p kf++e+g k + ++ l+ +gr+W+v l+ ++ + r+++ GW+ Fv+ + f+vFk++++ s+f Cucsa.366500.1 20 FFKVVMA-SALKDQKLEIPTKFVREYGVKAFATNQICLKVaADGRKWNVGLTKSNDGTRVWFHdHGWQTFVEFYSVGLEYFLVFKYERQsSSF-- 111 7777765.5556666***********87777888899999899********88888888666549*********************9876777.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v +f++ Cucsa.366500.1 112 YVVIFDR 118 9999997 PP | |||||||
2 | B3 | 34.4 | 3.9e-11 | 226 | 284 | 45 | 94 |
EEEEEE..EEETTEEEE-.........TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 45 sWevkliyrkksgryvlt.........kGWkeFvkangLkegDfvvFkldgrsefelvv 94 s +++ +++++ ++y+ + +GW++F k+n+Lk+gDf+vF+++g s+++ + Cucsa.366500.1 226 SSNFRWNWEGSCCWYMTKmmkkraeliSGWRKFKKDNNLKVGDFCVFEMIGLSSTRISF 284 556666667777777666777777777*********************99877776655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-17 | 16 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-18 | 16 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.53E-17 | 18 | 117 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 19 | 119 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-10 | 20 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-11 | 20 | 118 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-10 | 189 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-11 | 190 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-8 | 225 | 284 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.883 | 239 | 289 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.37E-10 | 251 | 289 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MDSFNYWKNR PRKALDNPHF FKVVMASALK DQKLEIPTKF VREYGVKAFA TNQICLKVAA 60 DGRKWNVGLT KSNDGTRVWF HDHGWQTFVE FYSVGLEYFL VFKYERQSSS FYVVIFDRTA 120 TEIEYPIKII CLDDAEEKRS VPKETHSKTG EVNFGAVELM DNKKKLWPTT TNQRERAMAS 180 ASAFQSMTLN PSFMCKMSTS HIHPGKSLYT KKVCRDAYRK VHGEHSSNFR WNWEGSCCWY 240 MTKMMKKRAE LISGWRKFKK DNNLKVGDFC VFEMIGLSST RISFKVEIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 1e-134 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 1e-134 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148067.1 | 1e-168 | PREDICTED: B3 domain-containing protein REM8-like | ||||
TrEMBL | A0A1S4E1R1 | 1e-141 | A0A1S4E1R1_CUCME; B3 domain-containing protein At3g18960-like | ||||
STRING | XP_004148067.1 | 1e-168 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01580.1 | 3e-18 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.366500.1 |