PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.365850.2
Common NameLOC101211577
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 191aa    MW: 20765.3 Da    PI: 10.5429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.365850.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-201463255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  Cucsa.365850.2 14 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDGAALRFRG 63
                    7********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-331472IPR001471AP2/ERF domain
SMARTSM003809.9E-361477IPR001471AP2/ERF domain
PROSITE profilePS5103225.8181471IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-221472IPR016177DNA-binding domain
PfamPF008479.4E-141463IPR001471AP2/ERF domain
PRINTSPR003673.2E-121526IPR001471AP2/ERF domain
CDDcd000187.54E-192272No hitNo description
PRINTSPR003673.2E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MAAAFSGEDR IRRRYRGVRQ RPWGKWAAEI RDPQKAARVW LGTFDTAEAA ARAYDGAALR  60
FRGSKAKLNF PEFVSVFPPS SLPSATHLAS SPVVVPPQDA IGNYLQYSRL LPNSRETSSQ  120
PVPAFERVLC NSPLVNPSSL VSSSGVSNFP FPLSEQQVRH YLPPENQSQG NGGSSMPFPT  180
GFSYRPPANG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-231371463ATERF1
3gcc_A3e-231371463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN8122350.0LN812235.1 Cucumis sativus mRNA for ethylene-responsive transcription factor 114, cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138542.21e-135PREDICTED: ethylene-responsive transcription factor ERF110-like
SwissprotQ9FH541e-33EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0A0KBY01e-134A0A0A0KBY0_CUCSA; Uncharacterized protein
TrEMBLA0A0C7KKK21e-134A0A0C7KKK2_CUCSA; Ethylene-responsive transcription factor 114
STRINGXP_004138542.11e-135(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-17ethylene response factor 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]