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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.365850.2 | ||||||||
Common Name | LOC101211577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20765.3 Da PI: 10.5429 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.4e-20 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++ a+++++g Cucsa.365850.2 14 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDGAALRFRG 63 7********.**********93....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-33 | 14 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-36 | 14 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.818 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 14 | 72 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-14 | 14 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-12 | 15 | 26 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.54E-19 | 22 | 72 | No hit | No description |
PRINTS | PR00367 | 3.2E-12 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAAAFSGEDR IRRRYRGVRQ RPWGKWAAEI RDPQKAARVW LGTFDTAEAA ARAYDGAALR 60 FRGSKAKLNF PEFVSVFPPS SLPSATHLAS SPVVVPPQDA IGNYLQYSRL LPNSRETSSQ 120 PVPAFERVLC NSPLVNPSSL VSSSGVSNFP FPLSEQQVRH YLPPENQSQG NGGSSMPFPT 180 GFSYRPPANG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 13 | 71 | 4 | 63 | ATERF1 |
3gcc_A | 3e-23 | 13 | 71 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN812235 | 0.0 | LN812235.1 Cucumis sativus mRNA for ethylene-responsive transcription factor 114, cultivar Summer Green. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138542.2 | 1e-135 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
Swissprot | Q9FH54 | 1e-33 | EF114_ARATH; Ethylene-responsive transcription factor ERF114 | ||||
TrEMBL | A0A0A0KBY0 | 1e-134 | A0A0A0KBY0_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A0C7KKK2 | 1e-134 | A0A0C7KKK2_CUCSA; Ethylene-responsive transcription factor 114 | ||||
STRING | XP_004138542.1 | 1e-135 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-17 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.365850.2 |
Entrez Gene | 101211577 |
Publications ? help Back to Top | |||
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