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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.365440.1 |
| Common Name | Csa_6G031440, LOC101210056 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
G2-like |
| Protein Properties |
Length: 372aa MW: 40158.7 Da PI: 7.5875 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.365440.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 103.1 | 1.7e-32 | 208 | 263 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
Cucsa.365440.1 208 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 263
79****************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 372 aa
Download sequence Send
to blast |
MLYSDKMQQI AAKLGFTLSD FADTLEQERR KVLMFQRELP LCLHLVSHAI DCCRQQLSGT 60
TTENRQSECS EQTSSDMGPV LEEFIPINRN GVSDFEKTEK NNKNDDSDLN NLNLAPSDWL 120
RSAQLWNQTS DPPPLNQDLP ENTPVVEVNR NGGAFRPFQK EKTGGGGGGG GASSSSPPAP 180
AAETSSTTET GSGGSSRREE KEAQNQRKQR RCWSPELHRR FLHALQQLGG SHVATPKQIR 240
ELMKVDGLTN DEVKSHLQKY RLHTRRPTPT IHNNEGGHAP QFLVVGGIWV PAAEYAAVST 300
TTSSGEVVSA ATTNGIYAPV VAAAAPQPLV STVQKPKPKP KPKIIPSSAV ECNSPTTSSS 360
THTSSVSPAS S*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 2e-13 | 208 | 261 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-13 | 208 | 261 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-13 | 208 | 261 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-13 | 208 | 261 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 2e-13 | 208 | 261 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
Plant Cell Physiol., 2016. 57(6): p. 1142-52
[PMID:27016098]
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