PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.365320.1 | ||||||||
Common Name | Csa_6G039270, LOC101218540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35483.4 Da PI: 4.2646 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 119 | 168 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 s+y+GVr++k +g+W+AeIrd + + +r++lg++ taeeA +a++ r+++e Cucsa.365320.1 119 SQYRGVRQRK-WGKWAAEIRDpF-----KgARIWLGTYNTAEEASQAYESKRLEFE 168 78*******9.**********55.....45**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-12 | 119 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.40E-24 | 119 | 173 | No hit | No description |
SuperFamily | SSF54171 | 3.33E-17 | 119 | 169 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-18 | 120 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.664 | 120 | 181 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-22 | 120 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MPEPRLLQLS NQKSFGKKSK SRPEDLKMSR KIRVICNDPD ATDSSSSEDE GEIQTKPLKL 60 KRIVREIHLP PFPFHPSKSM DVTTSTPSSS QDSNNGGKNQ ELKKKRVLAK TLSTRRSASQ 120 YRGVRQRKWG KWAAEIRDPF KGARIWLGTY NTAEEASQAY ESKRLEFESA LAAAPKSSNN 180 IVITSSSSSS EENEEESDSV VSQTSPAAAI LEMETSSSVL IKEDEEEMID TNLINELQVP 240 DLGFVDEGME INLGLPELDP FFMDDIGQFL DDFSAMDDIQ IYGFDDDVPS CLPDCDFDDF 300 GNDDISCWVD EALNVPCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-15 | 120 | 161 | 2 | 44 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681817 | 0.0 | LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140859.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A0A0K880 | 0.0 | A0A0A0K880_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140859.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.365320.1 |
Entrez Gene | 101218540 |
Publications ? help Back to Top | |||
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