PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.364910.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 255aa    MW: 29050.2 Da    PI: 4.9871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.364910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1884134155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+++AeIrdp     + +r++lg+f+++eeAa  +++a+ +++g
  Cucsa.364910.1  84 KKFRGVRRRP-WGKFAAEIRDPI----KrTRIWLGTFDSPEEAAIVYDQAAIRFRG 134
                     59********.**********73....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.70E-2984140No hitNo description
SuperFamilySSF541717.19E-2085141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2685140IPR001471AP2/ERF domain
SMARTSM003806.5E-3585148IPR001471AP2/ERF domain
PROSITE profilePS5103221.89185142IPR001471AP2/ERF domain
PfamPF008472.4E-1185134IPR001471AP2/ERF domain
PRINTSPR003673.8E-98697IPR001471AP2/ERF domain
PRINTSPR003673.8E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSAHSRFKF RERRSVTGIT LPPDYAAPRI LRIFVTDSDA TDTSSSDDDD NDDAHLLRLV  60
RRHINEIRFH DSTHSKPNEI PPTKKFRGVR RRPWGKFAAE IRDPIKRTRI WLGTFDSPEE  120
AAIVYDQAAI RFRGPDALTN IVKPPPRNVP AEEICDSSME ITEDGGGMRC SPTSVLRDEY  180
WRATEVLGDE MELMDNYYRA PRIFVEERSL PETAMFCGGL WEGSVDLDGN FGSFDTNCME  240
VIGRVDTNNE VKNTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1984141462ATERF1
3gcc_A2e-1984141462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656563.11e-171PREDICTED: ethylene-responsive transcription factor CRF6-like
TrEMBLA0A0A0KE471e-170A0A0A0KE47_CUCSA; Uncharacterized protein
STRINGXP_004160833.11e-171(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2445033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.17e-34cytokinin response factor 6