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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.364910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 29050.2 Da PI: 4.9871 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 84 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrdp + +r++lg+f+++eeAa +++a+ +++g Cucsa.364910.1 84 KKFRGVRRRP-WGKFAAEIRDPI----KrTRIWLGTFDSPEEAAIVYDQAAIRFRG 134 59********.**********73....34************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.70E-29 | 84 | 140 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-20 | 85 | 141 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 85 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-35 | 85 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.891 | 85 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-11 | 85 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-9 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-9 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSAHSRFKF RERRSVTGIT LPPDYAAPRI LRIFVTDSDA TDTSSSDDDD NDDAHLLRLV 60 RRHINEIRFH DSTHSKPNEI PPTKKFRGVR RRPWGKFAAE IRDPIKRTRI WLGTFDSPEE 120 AAIVYDQAAI RFRGPDALTN IVKPPPRNVP AEEICDSSME ITEDGGGMRC SPTSVLRDEY 180 WRATEVLGDE MELMDNYYRA PRIFVEERSL PETAMFCGGL WEGSVDLDGN FGSFDTNCME 240 VIGRVDTNNE VKNTX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 84 | 141 | 4 | 62 | ATERF1 |
3gcc_A | 2e-19 | 84 | 141 | 4 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681817 | 0.0 | LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656563.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A0A0KE47 | 1e-170 | A0A0A0KE47_CUCSA; Uncharacterized protein | ||||
STRING | XP_004160833.1 | 1e-171 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24450 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61630.1 | 7e-34 | cytokinin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.364910.1 |