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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.364870.1 |
Common Name | Csa_6G042990, LOC101207491 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
Trihelix |
Protein Properties |
Length: 564aa MW: 63410.6 Da PI: 6.2226 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.364870.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 87.5 | 1.6e-27 | 58 | 143 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW++qe+laL+++r++m++ +r++ k+plW+evs+k+ e gf+r+pk+Ckek+en+ k++k++k+ +++++++s++ +++ d+le
Cucsa.364870.1 58 RWPRQETLALLKIRSDMDTIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELE 143
8*********************************************************************9999999999999987 PP
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2 | trihelix | 103.1 | 2.1e-32 | 394 | 479 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev aLi++r+eme +++++ k+ lWee+s++mr g++rs+k+Ckekwen+nk++kk+k ++kkr +e+s+tcpyf+ql+a
Cucsa.364870.1 394 RWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKR-PEDSKTCPYFHQLDA 479
8*********************************************************************8.99***********85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 564 aa
Download sequence Send
to blast |
MDVIEPGEAA VTTEAGDAHE VGDSGGGGSG NGSNSGEEEK GSSLLLFEDG EKNFGGNRWP 60 RQETLALLKI RSDMDTIFRD ATHKAPLWDE VSRKLGELGF NRTPKKCKEK FENVYKYHKR 120 TKDVRSGKSD NSKKVYRFSD ELEAFDHPSS HHQNHMLLQS HHHHHPLPPT PTPPPPQVLP 180 STTPPPSYNP PATKTISSTV PSTMNNTTTN NTLPPKSSNN PLSNLPNMAA NVIFSSSTSS 240 STASEEDPFQ SSRRRRKKRK WSDFFLRLTK EVIEKQEGLQ LKFLEALERI ENQRKLRDEA 300 WRMKEMTRVN QEHEVLVQEM SMAAAKDAAV VAFLQKIAPF SSPPVPVPPP PTTTQPQNSE 360 NNGKLSSTIG SHVISMTTTN GKVMSSIIVG SPSRWPKGEV EALIRLRTEM EMKYQENGPK 420 GLLWEEISSA MRGLGYNRSS KRCKEKWENI NKYFKKVKYS NKKRPEDSKT CPYFHQLDAL 480 YREKEKSNMN FDINSQMEPL MVEPEQQWPP AFQPNSTQVM GNNLQRISGE ANQEEEEEDD 540 HGDDDDDVEE EDIGGSSSTD VED*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 253 | 258 | RRRKKR |
2 | 253 | 259 | RRRKKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |