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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cucsa.361410.1 |
| Common Name | Csa_4G166950 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
C2H2 |
| Protein Properties |
Length: 290aa MW: 31795.2 Da PI: 8.3813 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.361410.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.4 | 0.00049 | 223 | 245 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp C+ Fs+ s+L H + H
Cucsa.361410.1 223 QCPQCSAKFSSVSSLIDHVEKvH 245
7*****************99888 PP
|
| 2 | zf-C2H2 | 15 | 7.1e-05 | 262 | 283 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23
Cp+C++ F ++ L+ Hi + H
Cucsa.361410.1 262 CPKCSRGFVDPVALVEHIERdH 283
******************9988 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF118310 | 1.57E-12 | 4 | 59 | No hit | No description |
| PROSITE profile | PS51039 | 7.82 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 2.9E-10 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 9.9E-4 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 9.0E-12 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
| Gene3D | G3DSA:4.10.1110.10 | 6.9E-11 | 91 | 144 | IPR000058 | Zinc finger, AN1-type |
| SuperFamily | SSF118310 | 1.63E-9 | 93 | 143 | No hit | No description |
| PROSITE profile | PS51039 | 8.149 | 98 | 147 | IPR000058 | Zinc finger, AN1-type |
| SMART | SM00154 | 0.0086 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
| Pfam | PF01428 | 9.3E-9 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
| PROSITE profile | PS50157 | 8.85 | 222 | 245 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.027 | 222 | 245 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13894 | 3.0E-4 | 223 | 245 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 224 | 245 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 11 | 260 | 283 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.538 | 260 | 288 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 262 | 283 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MGTPEFPNLG KHCNFAECKQ IDFLPFTCDC CHQVFCLEHR SYNRHSCPKA DRWDVTVVIC 60
PLCAKGVRLI PDQDPNITWE IHVNTECDPS NYDKVTKKKK CPVPGCRELL TFSNTIKCRD 120
CSLDHCLKHR FGPDHKCPGP KKLEPTGFPF VGLLNRSRKE EKGPKKALST TSSSKWTAFL 180
NAASSVKASA EASMTKLSNE FSQTWISSGS SSNGGGGNGQ VEQCPQCSAK FSSVSSLIDH 240
VEKVHERGGN RTGPKKVVID ACPKCSRGFV DPVALVEHIE RDHGGTSRA*
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| Functional Description ? help
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| Source |
Description |
| UniProt | May be involved in environmental stress response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ870302 | 0.0 | AJ870302.1 Cucumis sativus mRNA for somatic embryogenesis zinc finger 2 (SEF2 gene). |
