PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.360770.1
Common NameCsa_7G452040, LOC101207907
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 360aa    MW: 39354.8 Da    PI: 6.9162
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.360770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-08261301954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Cucsa.360770.1 261 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 301
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-14258317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-12260315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5261301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.98E-5274306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDHLNWNGYG SRVAKKTTAS TTSSSSFWSN YQQGVEERFV ISSSNNSNFF NSVQDFPIKV  60
AANSSTPVLK TENPLAMSPS LTSFTTSSNM DVVGLLSQLD AGSNGDKSAT VTTCSLESLD  120
CLLSATNSNT DTSVEDDGSV SMMLTDYTNL WNFGGNAAVS SKESEKNDSG GFRIITDHDL  180
PKQKKPRSEK PPSSSNINFQ QSCSSGSSCI DQEPDPEAIA QMKEMIYRAA AFRPVNLGLE  240
MIEKPKRKNV RISSDPQTVA ARQRRERISE RIRVLQRLVP GGSKMDTASM LDEAANYLKF  300
LKSQIKALEN LGQKLESLNC PPTSIAFSFN PSFPIQTSSS HNNFTLLNPN HLINQYPQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141799.10.0PREDICTED: transcription factor bHLH87
RefseqXP_011659660.10.0PREDICTED: transcription factor bHLH87
RefseqXP_011659661.10.0PREDICTED: transcription factor bHLH87
RefseqXP_011659663.10.0PREDICTED: transcription factor bHLH87
TrEMBLA0A0A0K9P00.0A0A0A0K9P0_CUCSA; Uncharacterized protein
STRINGXP_004141799.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-54bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]