PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 374aa MW: 40960.9 Da PI: 10.2931

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.359990.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.1	7.1e-16	71	158	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ r+ +qCk++++ ++k+yk +k+ + + s++p++d+l+ Cucsa.359990.1 71 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYTKIPRTDIQCKNRIDTVKKKYKTEKAKITAG--GGPSKWPFYDRLD 158 7***********************************87666677899******************9997..67779****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-27	69	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MKEDDEIQSY PSPGSGSPAS PISNGRITVT VAAVAPPPPP PSSQNMITLA LPNQQSKGGG 60 GGSGGGGRED CWSEGATSVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS REDYTKIPRT 120 DIQCKNRIDT VKKKYKTEKA KITAGGGPSK WPFYDRLDQL IGPTSKNVAS TAGIATAVNP 180 PLHQNQKVPV GIPVMNRPII PFQAHHNHGH QPQSKGTKAQ KIQYHKRPRT TDSDSSGSDR 240 ETSPTSSDSY LQVKFRRKNV RVQKEAVNPN LGKTEKGKNG SREKGWGNAV SELAQAILKF 300 GEAYEQAESS KLQQVVEMEK QRMKFAKDLE LQRMQFFMKT QLEISQLKHG RRVVAAGNHH 360 CSNNNNSNSD SSN*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MKEDDEIQSY PSPGSGSPAS PISNGRITVT VAAVAPPPPP PSSQNMITLA LPNQQSKGGG  60
GGSGGGGRED CWSEGATSVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS REDYTKIPRT  120
DIQCKNRIDT VKKKYKTEKA KITAGGGPSK WPFYDRLDQL IGPTSKNVAS TAGIATAVNP  180
PLHQNQKVPV GIPVMNRPII PFQAHHNHGH QPQSKGTKAQ KIQYHKRPRT TDSDSSGSDR  240
ETSPTSSDSY LQVKFRRKNV RVQKEAVNPN LGKTEKGKNG SREKGWGNAV SELAQAILKF  300
GEAYEQAESS KLQQVVEMEK QRMKFAKDLE LQRMQFFMKT QLEISQLKHG RRVVAAGNHH  360
CSNNNNSNSD SSN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	67	KGGGGGSGGGGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141720.2	0.0	PREDICTED: trihelix transcription factor ASIL2
Swissprot	Q9LJG8	1e-101	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A0A0KCE8	0.0	A0A0A0KCE8_CUCSA; Uncharacterized protein
STRING	XP_004155903.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	3e-72	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cucsa.359990.1
Entrez Gene	101208469

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]