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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.359990.1 | ||||||||
Common Name | Csa_7G448720, LOC101208469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 374aa MW: 40960.9 Da PI: 10.2931 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.1 | 7.1e-16 | 71 | 158 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ r+ +qCk++++ ++k+yk +k+ + + s++p++d+l+ Cucsa.359990.1 71 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVssreDYTKIPRTDIQCKNRIDTVKKKYKTEKAKITAG--GGPSKWPFYDRLD 158 7*************************************87666677899**********************9997..67779******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-27 | 69 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010431 | Biological Process | seed maturation |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MKEDDEIQSY PSPGSGSPAS PISNGRITVT VAAVAPPPPP PSSQNMITLA LPNQQSKGGG 60 GGSGGGGRED CWSEGATSVL IDAWGERYLE LSRGNLKQKH WKEVADIVSS REDYTKIPRT 120 DIQCKNRIDT VKKKYKTEKA KITAGGGPSK WPFYDRLDQL IGPTSKNVAS TAGIATAVNP 180 PLHQNQKVPV GIPVMNRPII PFQAHHNHGH QPQSKGTKAQ KIQYHKRPRT TDSDSSGSDR 240 ETSPTSSDSY LQVKFRRKNV RVQKEAVNPN LGKTEKGKNG SREKGWGNAV SELAQAILKF 300 GEAYEQAESS KLQQVVEMEK QRMKFAKDLE LQRMQFFMKT QLEISQLKHG RRVVAAGNHH 360 CSNNNNSNSD SSN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 67 | KGGGGGSGGGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00356 | DAP | Transfer from AT3G14180 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 0.0 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141720.2 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 1e-101 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0A0KCE8 | 0.0 | A0A0A0KCE8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155903.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 3e-72 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.359990.1 |
Entrez Gene | 101208469 |
Publications ? help Back to Top | |||
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