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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.359880.3 | ||||||||
Common Name | Csa_7G448110, LOC101210678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 33562.1 Da PI: 4.8988 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Cucsa.359880.3 26 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 75 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.7E-37 | 26 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-22 | 26 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.092 | 26 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-32 | 26 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 26 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-12 | 27 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-12 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-12 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MYFAASKSVE FSGQAEKSAK RKRKNQYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE 60 EAARAYDAEA RRIRGKKAKV NFPDETPRTS GKRSAKANLQ EPLPKTSLAK TQPDLIQNNN 120 FVNNSDEAYY STMGFLEEKP LTNQLPNMDS LATNGDIVIK TSPASSDVVP MYFNSDQGSN 180 SFDYSDFGWG EQGARTPEIS SFLSSAMENE DSHFVEDASP KKKVKYSPEN TVVSQGSEKT 240 LSEELSSFES EMKYFQMPYL DGSWDASMDA FLAGETGNQD GGNSVDLWTF DDLAGMVGNV 300 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 25 | 91 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681805 | 0.0 | LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141728.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A0A0K9C0 | 0.0 | A0A0A0K9C0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141728.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-61 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.359880.3 |
Entrez Gene | 101210678 |
Publications ? help Back to Top | |||
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