PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.359880.2
Common NameCsa_7G448110, LOC101210678
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 302aa    MW: 33562.1 Da    PI: 4.8988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.359880.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192675255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Cucsa.359880.2 26 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 75
                    69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-372689IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-222685IPR016177DNA-binding domain
PROSITE profilePS5103224.0922683IPR001471AP2/ERF domain
CDDcd000181.06E-322684No hitNo description
Gene3DG3DSA:3.30.730.101.2E-322685IPR001471AP2/ERF domain
PfamPF008476.1E-122775IPR001471AP2/ERF domain
PRINTSPR003677.7E-122738IPR001471AP2/ERF domain
PRINTSPR003677.7E-124965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYFAASKSVE FSGQAEKSAK RKRKNQYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE  60
EAARAYDAEA RRIRGKKAKV NFPDETPRTS GKRSAKANLQ EPLPKTSLAK TQPDLIQNNN  120
FVNNSDEAYY STMGFLEEKP LTNQLPNMDS LATNGDIVIK TSPASSDVVP MYFNSDQGSN  180
SFDYSDFGWG EQGARTPEIS SFLSSAMENE DSHFVEDASP KKKVKYSPEN TVVSQGSEKT  240
LSEELSSFES EMKYFQMPYL DGSWDASMDA FLAGETGNQD GGNSVDLWTF DDLAGMVGNV  300
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2125911380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141728.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A0A0K9C00.0A0A0A0K9C0_CUCSA; Uncharacterized protein
STRINGXP_004141728.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-61related to AP2 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]