PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.359570.1

Common Name

Csa_7G447800, LOC101215755

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 304aa MW: 33950.8 Da PI: 6.8848

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.359570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.3	3.8e-17	231	267	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgpdg++tLCnaCGl+++ kg+ Cucsa.359570.1 231 CRHCGISEksTPMMRRGPDGPRTLCNACGLMWANKGT 267 ***99999**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	15.095	78	113	IPR010399	Tify domain
SMART	SM00979	3.6E-11	78	113	IPR010399	Tify domain
Pfam	PF06200	3.7E-13	84	112	IPR010399	Tify domain
PROSITE profile	PS51017	13.205	155	197	IPR010402	CCT domain
Pfam	PF06203	6.4E-16	155	197	IPR010402	CCT domain
PROSITE profile	PS50114	9.249	225	286	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.9E-11	225	278	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.94E-13	226	289	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.6E-15	230	272	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	8.4E-15	231	267	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.55E-15	231	286	No hit	No description
PROSITE pattern	PS00344	0	231	258	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDSIHPSDGR MHIGHAQHSM HTQSVQEQEH HDLHYMSNGN GLADEHENEG HGIMVVEREV 60 QSDHGDLAEN RGVMVDRGGE NCDQLTLSYQ GQVYVFDSVS PEKVQAVLLL LGGREVPLRV 120 PSIPITNQPN DRHLTDEAFN QALANIPPRL SVPQRLASLI RFREKRKERN FDKKIRYTVR 180 KEVALRMQRN KGQFTSSKPI HEDSSLAMAS WEQNESWSSD GNGSQQQEIL CRHCGISEKS 240 TPMMRRGPDG PRTLCNACGL MWANKGTLRD LSKTPNQGGQ TATFNRNENA VQNGDSESNP 300 KGV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00369	DAP	Transfer from AT3G21175	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG003874	0.0	HG003874.1 Cucumis sativus mRNA for GATA transcription factor 24-like, cultivar Summer Green.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658540.1	0.0	PREDICTED: GATA transcription factor 24-like isoform X2
Swissprot	Q8GXL7	1e-117	GAT24_ARATH; GATA transcription factor 24
TrEMBL	A0A0A0K7I4	0.0	A0A0A0K7I4_CUCSA; Uncharacterized protein
STRING	XP_004159006.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13651	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	1e-120	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Cucsa.359570.1
Entrez Gene	101215755

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]