PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.358990.1
Common NameCsa_7G446700, LOC101223116
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 386aa    MW: 44603 Da    PI: 4.5228
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.358990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.97.4e-15151235286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e+ +L++a  e+  + +r++l+   W+ev++k++e  ++ r+ +qC+++++ l+k+ykk+k  + +   + +s+++yf++++
  Cucsa.358990.1 151 WNEHETVVLLDAWGERFLQHGRKSLRSEEWQEVAEKVSEvSKIDRTDTQCRNRLDTLKKKYKKEKSKSTEM-GGPTSKWVYFKKMD 235
                     *************************************762678*************************997.566669*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-22150237No hitNo description
PROSITE profilePS500906.237151208IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4166220IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDNGEERYPI SKRYSVNHRE NFGSLPRQKI PFRDPSYSRP VSNQYVDDDV EDDEEEDGMG  60
EEEDENYQNN GFAHTSEEVD DGDDEDDFDM DEDIKQNNTV KLEDADLERH PKKRRLKNLI  120
SNYELAPRMP PPSSTPSQKS FVGGRNSLTD WNEHETVVLL DAWGERFLQH GRKSLRSEEW  180
QEVAEKVSEV SKIDRTDTQC RNRLDTLKKK YKKEKSKSTE MGGPTSKWVY FKKMDMLMSS  240
PPNQGGLSCG LDSGEYVFMN PRAYLNRANG LDEMRDSPDN SESDDCEDDE LDGLPPKKRI  300
YGRNNEDGSS FRMLADSIHK FSEIYEKIES SKRQQMMELE KMRMDFLRDL ELQKRQIMER  360
AQAEIAKLRQ GDDEEYGASA KSASG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117PKKRRLKN
2111116KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818050.0LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141778.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0A0K7960.0A0A0A0K796_CUCSA; Uncharacterized protein
STRINGXP_004141778.10.0(Cucumis sativus)
STRINGXP_004168281.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.18e-69Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]