PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.355680.1 | ||||||||
Common Name | Csa_1G629180, LOC101221373 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HSF | ||||||||
Protein Properties | Length: 258aa MW: 29883.8 Da PI: 8.451 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.3 | 3.8e-36 | 29 | 121 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed+++++++sw ++ ++f+v+ ++efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ e+ weF +++Fkkg+k+ll + Cucsa.355680.1 29 FLSKTYDLVEDPTTDHIVSWGQSLTTFIVWRPSEFATHILPNYFKHNNFSSFVRQLNTYGFKKIVAER---------WEFGNENFKKGEKQLLLE 114 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+ks+ Cucsa.355680.1 115 IQRRKSH 121 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.4E-37 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.86E-31 | 24 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.7E-52 | 25 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-19 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.1E-31 | 29 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-19 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 68 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEERMEENYN AGLCSSSVES QKANNPAPFL SKTYDLVEDP TTDHIVSWGQ SLTTFIVWRP 60 SEFATHILPN YFKHNNFSSF VRQLNTYGFK KIVAERWEFG NENFKKGEKQ LLLEIQRRKS 120 HNHNNNSQQI PFQLFHLHQQ QQLSLCYTTT SSSDPDILAA LTQDNRRLRR RNFMLLSELA 180 QMKNLYSDII YFIQNNVKPL DNKYCNRSVP KLVELDPPSS PTPMSPEIRL EEGNGMVKLF 240 GVPIRGKKRV LPEESEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-21 | 23 | 118 | 15 | 120 | Heat shock factor protein 1 |
5d5u_B | 4e-21 | 23 | 118 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-21 | 23 | 118 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-21 | 23 | 118 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681807 | 0.0 | LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139066.1 | 0.0 | PREDICTED: heat stress transcription factor B-4b-like | ||||
Swissprot | Q7XHZ0 | 1e-71 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | A0A0A0M2Y7 | 0.0 | A0A0A0M2Y7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004139066.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 2e-62 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.355680.1 |
Entrez Gene | 101221373 |
Publications ? help Back to Top | |||
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