PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.353890.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 304aa    MW: 33445.6 Da    PI: 7.704
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.353890.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-32216270155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LHe+Fv++v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Cucsa.353890.2 216 KTRIRWTQDLHEKFVDCVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 270
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.35E-17214270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28215271IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23216271IPR006447Myb domain, plants
PfamPF002491.7E-8220269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNAYGIDSKQ EIQQNHGLIT DYYSQNFRAE QPRRMGACAH LSAMDEVESS QHLNSCPSKP  60
SSTIINLFES PASAFFATEQ CMGIPPIQFQ SGSSSFNSLS TIFQSSAENF SLDSAEQSGV  120
DSEFSNTLQS VVKSQLCKRS FNGLPKGSFV EHKVFDGSSD TIKKHYSVPF KDQIGCYNSI  180
AQPSFCSTSP RFSCLGGSIG PGSSSSSFSG NGFTTKTRIR WTQDLHEKFV DCVNRLGGAE  240
KATPKAILKL MDSEGLTIFH VKSHLQKYRI AKYMPESAES RDFHTEKSIL ISIFILCFVC  300
FKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-24216273158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-24216273158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-24216273158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-24216273158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-24216273259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818820.0LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146408.10.0PREDICTED: uncharacterized protein LOC101221638
TrEMBLA0A0A0L1620.0A0A0A0L162_CUCSA; Uncharacterized protein
STRINGXP_004146408.10.0(Cucumis sativus)
STRINGXP_004156027.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.21e-37G2-like family protein