PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.353890.1

Common Name

Csa_4G499310, LOC101221638

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 401aa MW: 44661.2 Da PI: 7.8798

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.353890.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.1e-32	216	270	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fv++v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Cucsa.353890.1 216 KTRIRWTQDLHEKFVDCVNRLGGAEKATPKAILKLMDSEGLTIFHVKSHLQKYRI 270 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.13E-16	214	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-28	215	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-23	216	271	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	220	269	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-19	300	347	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MNAYGIDSKQ EIQQNHGLIT DYYSQNFRAE QPRRMGACAH LSAMDEVESS QHLNSCPSKP 60 SSTIINLFES PASAFFATEQ CMGIPPIQFQ SGSSSFNSLS TIFQSSAENF SLDSAEQSGV 120 DSEFSNTLQS VVKSQLCKRS FNGLPKGSFV EHKVFDGSSD TIKKHYSVPF KDQIGCYNSI 180 AQPSFCSTSP RFSCLGGSIG PGSSSSSFSG NGFTTKTRIR WTQDLHEKFV DCVNRLGGAE 240 KATPKAILKL MDSEGLTIFH VKSHLQKYRI AKYMPESAER RCDRRNCMNE VTELDAKTAM 300 QIKDALQLQL DVQRRLHDQL EIQRKLQLQI EEQGKQLKMM FDQQQETNKC FFRTTTTDGL 360 FNKPTPNNSN VLGYIDNPPI PTTVPAVDNI RNAQFPSKIS *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MNAYGIDSKQ EIQQNHGLIT DYYSQNFRAE QPRRMGACAH LSAMDEVESS QHLNSCPSKP  60
SSTIINLFES PASAFFATEQ CMGIPPIQFQ SGSSSFNSLS TIFQSSAENF SLDSAEQSGV  120
DSEFSNTLQS VVKSQLCKRS FNGLPKGSFV EHKVFDGSSD TIKKHYSVPF KDQIGCYNSI  180
AQPSFCSTSP RFSCLGGSIG PGSSSSSFSG NGFTTKTRIR WTQDLHEKFV DCVNRLGGAE  240
KATPKAILKL MDSEGLTIFH VKSHLQKYRI AKYMPESAER RCDRRNCMNE VTELDAKTAM  300
QIKDALQLQL DVQRRLHDQL EIQRKLQLQI EEQGKQLKMM FDQQQETNKC FFRTTTTDGL  360
FNKPTPNNSN VLGYIDNPPI PTTVPAVDNI RNAQFPSKIS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	216	273	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	216	273	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681882	0.0	LN681882.1 Cucumis melo genomic scaffold, anchoredscaffold00010.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146408.1	0.0	PREDICTED: uncharacterized protein LOC101221638
Swissprot	Q0WVU3	1e-72	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A0A0L162	0.0	A0A0A0L162_CUCSA; Uncharacterized protein
STRING	XP_004146408.1	0.0	(Cucumis sativus)
STRING	XP_004156027.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	6e-71	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.353890.1
Entrez Gene	101221638

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]