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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.353130.1 |
Common Name | Csa_4G645820, LOC101212868 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
HD-ZIP |
Protein Properties |
Length: 262aa MW: 28821.7 Da PI: 7.5907 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.353130.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62.8 | 5e-20 | 109 | 163 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tk+q +Le+ F++++ +s +++++LA++l+L rqV vWFqNrRa+ k
Cucsa.353130.1 109 RKKLRLTKHQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTK 163
78889************************************************98 PP
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2 | HD-ZIP_I/II | 119.8 | 1.5e-38 | 109 | 197 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl+k+q+++LE++F+e++ L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++lkeen+rL+ke +eL+ +
Cucsa.353130.1 109 RKKLRLTKHQSAILEDNFKEHSSLSPKQKQDLARQLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELK-S 197
69*************************************************************************************9.4 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MDTDCNTGLL LGLGRVSGHN INASVRSELP ALNKKKLQQV LKFDDDILPS LTLGLSFVVD 60 TATEDGCSGS PVSSFSNSSG FKRERAGEEV AETEECMKVG EEDEEGSPRK KLRLTKHQSA 120 ILEDNFKEHS SLSPKQKQDL ARQLNLRPRQ VEVWFQNRRA RTKLKQTEMD CELLKKCCEK 180 LKEENTRLQK ELQELKSLKL TPPPFCMQLQ AATLTVCPSC ESSICGGSSS GGDASPANNF 240 SIGSKPQFLK FPFNHPSAAC N*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 157 | 165 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]
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