PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.353000.1
Common NameCsa_4G644670, LOC101211417
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 133aa    MW: 15904.1 Da    PI: 10.4358
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.353000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.41.3e-1254112563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     +r +r+++NRe+ArrsR+RKk  +e+L+   + L+ +N++Lk +l+   + ++ ++ ++
  Cucsa.353000.1  54 RRRKRMISNRESARRSRLRKKRHLENLAIQTDRLKMKNQELKRQLNLVVNRCYMVRRQN 112
                     799********************************************999999877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-1350114IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-1051105No hitNo description
PROSITE profilePS5021710.47352115IPR004827Basic-leucine zipper domain
PfamPF001705.8E-1053112IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-1154105No hitNo description
CDDcd147025.07E-1455105No hitNo description
PROSITE patternPS0003605772IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MFYPEGEIVE FHRPEPGFTS AEIQELWSLL EDPARSNSGS QDSFQAISLI DEERRRKRMI  60
SNRESARRSR LRKKRHLENL AIQTDRLKMK NQELKRQLNL VVNRCYMVRR QNEGLWSEFV  120
ALHARLSDLY RIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15574RKRMISNRESARRSRLRKKR
26672RRSRLRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-151LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-151LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141411.12e-93PREDICTED: basic leucine zipper 43-like
TrEMBLA0A0A0KZZ45e-92A0A0A0KZZ4_CUCSA; Uncharacterized protein
STRINGXP_004141411.18e-93(Cucumis sativus)
STRINGXP_004165745.18e-93(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59963052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.15e-20basic leucine-zipper 5
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]