PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.352750.1
Common NameCsa_4G642470, LOC101209196
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 328aa    MW: 36714.6 Da    PI: 5.1088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.352750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-102532931055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Cucsa.352750.1 253 RKRRERINERLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 293
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-14242309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-11252297No hitNo description
PfamPF000107.9E-8253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDCFGGNLSG EAGEWDLCSS ILSLEDPDYM HIINPHPTTS PGLMADHAAW FCSNLDSNGV  60
DQYQFPCIAA AAAVYDDYYG HNHMSMSIID EDNNNLESIF SASSTEFLLQ EISSTGFSED  120
HKFLNMDIVQ THLGDEDDDN PLFHHKRKSS IVAPDDHDHD QNQLIKPNKK IRTSNNVQIK  180
SRKGTESSGN SKKVSSTRRR KCEEEQENGR SSCDMNSCSS DNSSEDDNNN ASPKPKTRAT  240
RGSATDPQSL YARKRRERIN ERLRILQKLV PNGTKVDIST MLEEAVHYVK FLQLQIKLLS  300
SDDLWMYAPI AYNGMDIGLQ QKLSSIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-150LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-150LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141402.10.0PREDICTED: transcription factor bHLH84
TrEMBLA0A0A0L5330.0A0A0A0L533_CUCSA; Uncharacterized protein
STRINGXP_004164586.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-40bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]