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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.352470.1 |
| Common Name | Csa_4G641590, LOC101219005 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
ERF |
| Protein Properties |
Length: 150aa MW: 16933.9 Da PI: 9.4364 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.352470.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 56 | 9.5e-18 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g
Cucsa.352470.1 29 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 78
69*****99.**********9...336*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009409 | Biological Process | response to cold |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0010200 | Biological Process | response to chitin |
| GO:0010941 | Biological Process | regulation of cell death |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:0042742 | Biological Process | defense response to bacterium |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 150 aa
Download sequence Send
to blast |
MEGEVCSVNS SSPKRKQRHD QNHLQQQKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYT 60
TPVAAARAYD TAVFYLRGPT ARLNFPDLMF ETDQLHDMSA ASIRKRATEV GARVDAIQTS 120
LHASNSAGTQ ISDKPDLNEY PNPETSDDD*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G50260.1 | 1e-55 | cooperatively regulated by ethylene and jasmonate 1 |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Shen PC,Hour AL,Liu LD
Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
Bot Stud, 2017. 58(1): p. 22
[PMID:28510204]
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