PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.352460.1
Common NameCsa_4G641580, LOC101206044
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 421aa    MW: 48225.5 Da    PI: 7.3052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.352460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.6e-05161184123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg+ ++++ +Lk+H +  H
  Cucsa.352460.1 161 YVCGVCGRKCKTNLDLKKHFKQlH 184
                     9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.7E-682151IPR029060PIN domain-like
PROSITE profilePS5015710.679161189IPR007087Zinc finger, C2H2
PROSITE patternPS000280163184IPR007087Zinc finger, C2H2
CDDcd061671.91E-12173315No hitNo description
Gene3DG3DSA:3.40.50.10103.7E-6246311IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNNTNFVFNP MLPLPLLPSS SQLLFSNNPI HFKHRVSVVV KPTFQASFRW RIRATAENGA  60
SSASTSQIDM VRNREGIFTA KQSKVVVLWD LDNKPPRGPP YEAAMALKRV AQRFGQVVDM  120
SAYANRHAFI HLPQWVVEER RERRQLDILE RKGLFTPSES YVCGVCGRKC KTNLDLKKHF  180
KQLHERERQK KLNRMRSLKG KKRQRYKERF VSGNHKYNEA ARSVITPKVG YGLASELRRA  240
GFFVKTVEDK PQAADWALKK QMQHSMSRGI DWMFLVSDDS DFSEMLRKAK EANLGTVVVG  300
DRDRALGRHA DLWVPWMGVE NGDVTEEDLV PKKWRMRRRD KEVDEGDDGF SVSSFYGDIA  360
GSDLESVVEE LASTSTEFNG LRISAFSEGE DDEEEDDDWV EEDVAPDYLL VMSDEEDGYF  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141389.10.0PREDICTED: uncharacterized protein LOC101206044
TrEMBLA0A0A0KZU40.0A0A0A0KZU4_CUCSA; Uncharacterized protein
STRINGXP_004172977.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-164C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]