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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.352340.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 26617.4 Da PI: 10.2114 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.9 | 5.1e-29 | 25 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF P+de+l+ +yL +k++g++ + + ik+++ ++++P dLp ka++k+wy+++ ++ +++ g + k+gyW+ +gk Cucsa.352340.2 25 LPPGCRFFPSDEQLLRFYLSNKASGHNDS--NLIKDLNPFDYDPFDLPDsacfsyGSKARKKHWYYYALTAFREN-GGWIRM--KTGYWRRKGKV 114 79***********************9954..48**************944788765556888******9988764.444443..579******** PP NAM 90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 kev+ ++g + g+k+t+vfy g + +k+ kt+W+m ey+l Cucsa.352340.2 115 KEVTGRRGLVLGIKRTFVFYLGnSINKSLKTNWIMYEYAL 154 ********************883567788*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-32 | 15 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.479 | 25 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-18 | 26 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MELPQSLQPP SSSSSSSFSF SSSSLPPGCR FFPSDEQLLR FYLSNKASGH NDSNLIKDLN 60 PFDYDPFDLP DSACFSYGSK ARKKHWYYYA LTAFRENGGW IRMKTGYWRR KGKVKEVTGR 120 RGLVLGIKRT FVFYLGNSIN KSLKTNWIMY EYALDHRFKV LLLPISFQSI GNRVNLFWRY 180 VFLSPFHRSL IVERPWFVQN VLSSNGSISL FDGQISRIWY GYCDRLFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-20 | 24 | 154 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-20 | 24 | 154 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-20 | 24 | 154 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-20 | 24 | 154 | 16 | 142 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-20 | 24 | 154 | 16 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-20 | 24 | 154 | 16 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141384.2 | 6e-95 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A0A0L0B7 | 1e-93 | A0A0A0L0B7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004169662.1 | 2e-95 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 2e-19 | NAC domain containing protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.352340.2 |