PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.350940.1

Common Name

Csa_1G269350, LOC101211609

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 423aa MW: 44173.3 Da PI: 6.8369

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.350940.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	215	260	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cucsa.350940.1 215 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 260 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.97E-17	208	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.73E-13	208	264	No hit	No description
PROSITE profile	PS50888	17.39	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	212	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-9	215	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MQPCSREMQS LNSLLNHSQI SLQDLHADHH LNPPPPQIPP SHFHHFDPSA ASNDDFLEQM 60 LNTIPSCSWP DLNPSNPKSP WDLNPINKPS RDISDDPHQN HLTATSPAAK AAVMLQQQLL 120 LSRGMSGSAG NGVADHGLPP MPLSLGNADL DRSQNDVVDG SCFRPPNSGG SLQSNSFGAP 180 GNVMNQTPGG GSAGVSQSQP KQKVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA 240 NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADVSSEGGG ECMQGSGAQA 300 GGRNSNNNGN GGNQTASTND SMTVTEQQVA KLMEKDMGSA MQYLQGKGLC LMPISLATAI 360 STSTCHSRNP LMNGGGGGGG SQHPVMGSNG EGPSSPSMSV LTVQSTSMGN GSVKDAASVS 420 KP*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MQPCSREMQS LNSLLNHSQI SLQDLHADHH LNPPPPQIPP SHFHHFDPSA ASNDDFLEQM  60
LNTIPSCSWP DLNPSNPKSP WDLNPINKPS RDISDDPHQN HLTATSPAAK AAVMLQQQLL  120
LSRGMSGSAG NGVADHGLPP MPLSLGNADL DRSQNDVVDG SCFRPPNSGG SLQSNSFGAP  180
GNVMNQTPGG GSAGVSQSQP KQKVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA  240
NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADVSSEGGG ECMQGSGAQA  300
GGRNSNNNGN GGNQTASTND SMTVTEQQVA KLMEKDMGSA MQYLQGKGLC LMPISLATAI  360
STSTCHSRNP LMNGGGGGGG SQHPVMGSNG EGPSSPSMSV LTVQSTSMGN GSVKDAASVS  420
KP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	224	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681808	0.0	LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146688.1	0.0	PREDICTED: transcription factor bHLH82
Swissprot	Q9ZUG9	2e-85	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0A0LWM2	0.0	A0A0A0LWM2_CUCSA; Uncharacterized protein
STRING	XP_004146688.1	0.0	(Cucumis sativus)
STRING	XP_004171536.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-64	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Cucsa.350940.1
Entrez Gene	101211609

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]