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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.349690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CAMTA | ||||||||
Protein Properties | Length: 900aa MW: 100669 Da PI: 6.4526 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171 | 1.8e-53 | 22 | 136 | 3 | 116 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+L+n++++r+fr+DG+sw+kk+dg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr Cucsa.349690.1 22 REaQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQR 116 55599****************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhyle 116 r+yw+L+ + ++ivlvhy++ Cucsa.349690.1 117 RSYWMLDLSCDHIVLVHYRD 136 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.332 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.9E-74 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-46 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 2.3E-5 | 335 | 418 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.66E-17 | 335 | 418 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 2.4E-6 | 335 | 411 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00137 | 335 | 419 | No hit | No description |
CDD | cd00204 | 3.17E-14 | 516 | 622 | No hit | No description |
SuperFamily | SSF48403 | 2.02E-16 | 517 | 624 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.5E-16 | 528 | 624 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.592 | 530 | 622 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.8E-7 | 539 | 623 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.22 | 563 | 595 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 5.2E-4 | 563 | 592 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 15 | 680 | 702 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.638 | 681 | 709 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.3E-7 | 683 | 789 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 1.4 | 737 | 759 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.114 | 738 | 767 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0087 | 740 | 758 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 4.2E-4 | 760 | 782 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.883 | 761 | 785 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.7E-5 | 763 | 782 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence Send to blast |
MPSFYLSVCH LRLRYDINDL YREAQTRWLK PPEVLFILQN HEKYQLTEEA PKQPTSGSLF 60 LFNKRVLRFF RRDGHSWRKK RDGRTVGEAH ERLKVGNAEA LNCYYAHGEH NPNFQRRSYW 120 MLDLSCDHIV LVHYRDINEG RSGTESVPHL SPASVSTSGS CSSQNLASEY QQTSLSPGSV 180 EVTSDTGNHT IESNGVDGHF EISEIKGSNE RDVSQALRRI EEQLSLNEDS LKDIGSFYGQ 240 DEDSNSNLID FYEMSNEDQV SVLQHQENAI HDNNYTSFMM QAFPMLGSCT STEYSSPLDT 300 HDTNSNYNIP FLKQEHGNSF EVDTSLIVAQ VQKFTIREIV PEQGYATEST KVIIIGSFLC 360 DPLESPWACM FGDIEVPLQI VQNGVLCCKA PPHLPGKVAF CITSGNREPC SEVREFEYKM 420 NVCSHCQSHS TGAAKSPEEL LLLVRLVQLL LSDSLMQKSD RLDTGFRSNS LKAGDDQWSS 480 LIEALLVGSE TPSSTTDWLF QELLKDKLLL WLSSQQKNRH DLTDCLLSKK EQGVIHMIAG 540 LGYVWALNPI LRCGVNINFR DINGWTALHW AARFGREKMV AALIASGASA GAVTDPSSQN 600 PDGKTAASIA DIHGHKGLAG YLSEVALTSH LSSLTLEESE LSKGSAEVEA EMTVSCISNG 660 NLSSAEDYIP LKNTLAAVRN AAQAAARIQS AFRAHSFRKR QQKEAAFAAC IDEYGIDPND 720 IQGLFAMSKM NFSNRRDYNA AALSIQKKYR GWKGRKEFLS LRQKVVKIQA HVRGYQVRKH 780 YKIICWAVGI LDKVVLRWRR KGVGLRGFRS EIGSIDESED DDILKVFRKQ KVEGNIDEAV 840 SRVLSMVDSP DARQQYHRMV EGFREAKAEL DGASNKSAAS TSLTDISGME DCNQYPKFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140640.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 4 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A0A0KCA8 | 0.0 | A0A0A0KCA8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140640.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004166127.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4548 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-178 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.349690.1 |
Publications ? help Back to Top | |||
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