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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.349650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 80aa MW: 9010.3 Da PI: 10.886 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.1 | 4e-27 | 27 | 77 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ie+ nr+vtf+kRr g+lKKA+ELSvLCd++v +i+f ++g+lye+ss Cucsa.349650.1 27 KLIEDRCNRHVTFCKRRSGLLKKAKELSVLCDVQVGIILFTNRGRLYEFSS 77 569**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.68E-26 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.338 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-30 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-26 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-23 | 29 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-26 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-26 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MTGTREKATE AGGGFGRKMG RKKIEVKLIE DRCNRHVTFC KRRSGLLKKA KELSVLCDVQ 60 VGIILFTNRG RLYEFSSGNX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-17 | 19 | 79 | 1 | 61 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 5e-91 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 5e-91 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656809.1 | 1e-37 | PREDICTED: MADS-box transcription factor 8-like | ||||
Swissprot | Q38836 | 1e-23 | AGL11_ARATH; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A1S3CCC5 | 8e-34 | A0A1S3CCC5_CUCME; MADS-box transcription factor 8-like | ||||
STRING | XP_004140533.1 | 1e-36 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-23 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.349650.1 |
Publications ? help Back to Top | |||
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