PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.349220.1
Common NameCsa_6G091850, LOC101222632
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 356aa    MW: 38737.5 Da    PI: 5.3571
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.349220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix864.7e-2741135186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rWt+qe+l+Li++++  e+r+r g+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ +++++s +++ ++l+
  Cucsa.349220.1  41 RWTRQEILVLIQGKKVAETRVRGGRaaslafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIREDTESFWVMRNDLR 135
                     8*********************875566777777**********************************************999999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1141131No hitNo description
PROSITE profilePS500906.441107IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.3E-541106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MALQQLSLGP TPVDGVTNGV DVRPMSTDGG DDGSKTPRLP RWTRQEILVL IQGKKVAETR  60
VRGGRAASLA FGSGQVEPKW ASVSSYCKRH GVNRGPVQCR KRWSNLAGDF KKIKEWESQI  120
REDTESFWVM RNDLRRERKL PGFFDREVYD ILDSGSAPSP SPALALALTP LPIPVPPPAL  180
NSDDGKPDAE PEHVFDSSKT AAADDGLFSD FEQDETCRSP LKEVAGKDVP PPTADGGIPA  240
PTPLSEKLYR PPGHDCPDQG TTNEKEAAAN PEIGSTSSQE GRKRKRVALD GDEETILQDE  300
LIGILEKNGK LLTAQLEAQN MNFQLDREQR KHHADGLVAV LNKLADALGR IADKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140557.10.0PREDICTED: uncharacterized protein LOC101222632 isoform X1
SwissprotQ8VZ201e-124ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A0A0KDF50.0A0A0A0KDF5_CUCSA; Uncharacterized protein
STRINGXP_004140557.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-120Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]