PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.345940.4
Common NameCsa_7G051420, LOC101213813
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 267aa    MW: 29961.7 Da    PI: 6.4183
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.345940.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.85e-56811851102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl
  Cucsa.345940.4  81 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 175
                     89******988889********************************************************************************* PP

           NF-YC  93 vdivprdelk 102
                     vdi+prdelk
  Cucsa.345940.4 176 VDIIPRDELK 185
                     *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.39E-3459175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-3795167IPR009072Histone-fold
PfamPF008082.3E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDQSERSQHQ QQSQQPAGGV GAGQLQYSNP YQTAPMVASG TPAITIPPTQ PPSSFSNSPH  60
QLAYQQAQHF HHQQQQQQQQ QLQMFWANQM QEIEQTTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP  180
RDELKEEGLG ITKASLPVVG SPADLPYYYV PSQHPVGATG MIMGKQLDQA NMYGATAQQP  240
RPSMPFMPWP HTQPQQQQQT QQQSDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-5989181395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136852.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_008455266.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_008455267.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_011658757.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_016901763.10.0PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ655V55e-81NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0A0K5U10.0A0A0A0K5U1_CUCSA; Uncharacterized protein
TrEMBLA0A1S3C1900.0A0A1S3C190_CUCME; nuclear transcription factor Y subunit C-2
STRINGXP_008455266.10.0(Cucumis melo)
STRINGXP_004136852.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-81nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]