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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.342750.1 | ||||||||
Common Name | Csa_3G865380, LOC101204876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 122aa MW: 13268.5 Da PI: 10.5341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +kGVr++ +g+WvAeIr+p + r +r +lg+f+ta eAa a++aa++kl+g Cucsa.342750.1 33 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAHEAALAYDAAARKLYG 82 69****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-21 | 32 | 92 | No hit | No description |
SuperFamily | SSF54171 | 5.43E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-36 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.023 | 33 | 90 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-14 | 34 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MDRKSRTNNN VAQASSRKGC MRGKGGPDNA ACTFKGVRQR TWGKWVAEIR EPNRGARLWL 60 GTFDTAHEAA LAYDAAARKL YGSEAKLNLP QTTTTSHELP QLEHGGQSPS NNNIIASPSP 120 TX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 34 | 90 | 6 | 63 | ATERF1 |
3gcc_A | 5e-19 | 34 | 90 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147872.1 | 2e-85 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
Swissprot | Q9LQZ2 | 1e-48 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A0A0LE58 | 4e-84 | A0A0A0LE58_CUCSA; Uncharacterized protein | ||||
STRING | XP_004167757.1 | 6e-85 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.342750.1 |
Entrez Gene | 101204876 |
Publications ? help Back to Top | |||
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