PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.342640.2
Common NameCsa_3G860270, LOC101205604
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 428aa    MW: 46508.6 Da    PI: 7.3661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.342640.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-053143521255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Cucsa.342640.2 314 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 352
                     7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-9312355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.75E-5312354No hitNo description
Gene3DG3DSA:4.10.280.101.8E-7316354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MESTANLNHH QHQLQDHQLL LASSSSSSSS SSSLSIVPSY FGLGTAWSSN ISLNNNNTCN  60
VYDNPTIFNG EVTTTNSSHP IRSSDCSNNF FTQSLHHSQQ QISSTPPTTP PPPPPHHQSF  120
PKFTEILNNN NNITNLQDFI NINNNNDSDL NDLTHKLLIK TLISSGCQIN GTDHPIISRS  180
SNNNRPPHFP QIYPSINVSN WNLSSQPPPP PSFSNSLDLN LQTPADMLVG SFRQDNFGIF  240
KETVSDFHDQ IQESPPTGTL PCIIPSKMTT YSSAEECKPK RGCNSMESRL NQQSPPLKKS  300
RLDSRASCPP FKVRKEKLGD RIAALQQLVA PFGKTDTASV LMEAIGYIKF LQNQTLSVPY  360
MKPAGGNKAT QPTHRSSVED GNEGGQNRDL RSRGLCLVPL GCLSYVTGDS GGGVGIWPPP  420
GFNGGTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652433.10.0PREDICTED: transcription factor bHLH110 isoform X3
TrEMBLA0A0A0LJ180.0A0A0A0LJ18_CUCSA; Uncharacterized protein
STRINGXP_004147875.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-46bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]