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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.342640.1 | ||||||||
Common Name | Csa_3G860270, LOC101205604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 46736.9 Da PI: 7.1766 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 6e-05 | 314 | 352 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Cucsa.342640.1 314 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 352 7788899*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.299 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.03E-5 | 312 | 356 | No hit | No description |
SuperFamily | SSF47459 | 1.01E-10 | 312 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-9 | 316 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MESTANLNHH QHQLQDHQLL LASSSSSSSS SSSLSIVPSY FGLGTAWSSN ISLNNNNTCN 60 VYDNPTIFNG EVTTTNSSHP IRSSDCSNNF FTQSLHHSQQ QISSTPPTTP PPPPPHHQSF 120 PKFTEILNNN NNITNLQDFI NINNNNDSDL NDLTHKLLIK TLISSGCQIN GTDHPIISRS 180 SNNNRPPHFP QIYPSINVSN WNLSSQPPPP PSFSNSLDLN LQTPADMLVG SFRQDNFGIF 240 KETVSDFHDQ IQESPPTGTL PCIIPSKMTT YSSAEECKPK RGCNSMESRL NQQSPPLKKS 300 RLDSRASCPP FKVRKEKLGD RIAALQQLVA PFGKTDTASV LMEAIGYIKF LQNQVETLSV 360 PYMKPAGGNK ATQPTHRSSV EDGNEGGQNR DLRSRGLCLV PLGCLSYVTG DSGGGVGIWP 420 PPGFNGGTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 0.0 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652433.1 | 0.0 | PREDICTED: transcription factor bHLH110 isoform X3 | ||||
TrEMBL | A0A0A0LJ18 | 0.0 | A0A0A0LJ18_CUCSA; Uncharacterized protein | ||||
STRING | XP_004147875.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4045 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 4e-49 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.342640.1 |
Entrez Gene | 101205604 |
Publications ? help Back to Top | |||
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