PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.340600.3
Common NameCsa_3G844850, LOC101206445
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 389aa    MW: 42200.1 Da    PI: 8.7017
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.340600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.1e-344094155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wtp+LH+rFveav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl
  Cucsa.340600.3 40 KPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 94
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.2673797IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-313895IPR009057Homeodomain-like
SuperFamilySSF466898.24E-173995IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-234095IPR006447Myb domain, plants
PfamPF002493.3E-94293IPR001005SANT/Myb domain
PfamPF143797.8E-24150196IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MYHHQHRGKS IHSSERHMFL QGGGNGGGGD SGLVLSTDAK PRLKWTPDLH DRFVEAVNQL  60
GGADKATPKT VMKIMGIPGL TLYHLKSHLQ KYRLSKNLHG QANGGSGTNK TVAVSVDQRL  120
GEANGAAAAA RTSNIVVGPQ PTSQSNKSLQ ISETIQMQIE VQKRLHEQLE VQRHLQLRIE  180
AQGKYLQTVL EKAQETLGRQ NLGTVGLEAA KVQLSELVSK VSTQCLTAAF PELHNQSQSQ  240
RVCAQQQSQP PDCSMDSCLT SSEGGSKDQQ AQQQQHVLLH NSHLALRPYA DRASSGAPDH  300
SLHGLSMSIG LVQGEKAGPE GYNGYSTSEG QRLFGSKRTK DAVMEKETGF RYRMDLNNAG  360
EDQLISSNNN NDHTSSTTCK MFDLNGFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-214096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-214096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-214096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-214096157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331339RLFGSKRTK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818390.0LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652325.10.0PREDICTED: uncharacterized protein LOC101206445 isoform X2
SwissprotQ9SQQ91e-117PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0A0LG980.0A0A0A0LG98_CUCSA; Uncharacterized protein
STRINGXP_004141144.10.0(Cucumis sativus)
STRINGXP_004158336.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-107G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]