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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.340600.1 | ||||||||
Common Name | Csa_3G844850, LOC101206445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | G2-like | ||||||||
Protein Properties | Length: 397aa MW: 43015 Da PI: 8.9162 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.3e-34 | 40 | 94 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rFveav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl Cucsa.340600.1 40 KPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 94 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.267 | 37 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-31 | 38 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.42E-17 | 39 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 40 | 95 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-9 | 42 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.0E-24 | 158 | 204 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MYHHQHRGKS IHSSERHMFL QGGGNGGGGD SGLVLSTDAK PRLKWTPDLH DRFVEAVNQL 60 GGADKATPKT VMKIMGIPGL TLYHLKSHLQ KYRLSKNLHG QANGGSGTNK TGTGWRVGTV 120 AVSVDQRLGE ANGAAAAART SNIVVGPQPT SQSNKSLQIS ETIQMQIEVQ KRLHEQLEVQ 180 RHLQLRIEAQ GKYLQTVLEK AQETLGRQNL GTVGLEAAKV QLSELVSKVS TQCLTAAFPE 240 LHNQSQSQRV CAQQQSQPPD CSMDSCLTSS EGGSKDQQAQ QQQHVLLHNS HLALRPYADR 300 ASSGAPDHSL HGLSMSIGLV QGEKAGPEGY NGYSTSEGQR LFGSKRTKDA VMEKETGFRY 360 RMDLNNAGED QLISSNNNND HTSSTTCKMF DLNGFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-21 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-21 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-21 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-21 | 40 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 347 | RLFGSKRTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681839 | 0.0 | LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011652324.1 | 0.0 | PREDICTED: uncharacterized protein LOC101206445 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-115 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A0A0LG98 | 0.0 | A0A0A0LG98_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141144.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004158336.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-105 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.340600.1 |
Entrez Gene | 101206445 |