PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.340200.1
Common NameCsa_3G841480, LOC101220675
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 244aa    MW: 27120.7 Da    PI: 8.5041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.340200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.5e-1476122354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  Cucsa.340200.1  76 KNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVVERVKEL 122
                     58*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.78373122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1176122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-1176125No hitNo description
SuperFamilySSF474591.96E-1377129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1377131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1179128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MMQRPDHDHD QPQSSELYRL LAQTGAFTLG GPAFPPPPAS TQTMSSSSSY YPLDNNKSPQ  60
GVAAPTPHDR ALAALKNHKE AEKRRRERIN SHLDKLRTLL PCNSKTDKAS LLAKVVERVK  120
ELKNETLEIA ELESFPSETD EISVLSGEKS EDGRLLFKAS LCCEDRSDLI PDLNDILNSL  180
HLKTLRADIV TVGGRIRNVL LIAANDHHSV ESVHFLQNAL KSLIERSNSS LTSKRRRLVL  240
HHK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233237KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818400.0LN681840.1 Cucumis melo genomic scaffold, anchoredscaffold00098.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141200.11e-178PREDICTED: transcription factor bHLH106-like
SwissprotO806744e-76BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0A0LFL01e-176A0A0A0LFL0_CUCSA; Uncharacterized protein
STRINGXP_004141200.11e-177(Cucumis sativus)
STRINGXP_004158358.11e-177(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-73bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]