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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.339580.2 |
| Common Name | Csa_3G835890 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
HD-ZIP |
| Protein Properties |
Length: 212aa MW: 23735.5 Da PI: 4.442 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.339580.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.9 | 3.4e-18 | 4 | 48 | 12 | 56 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++ Le+ Fe+++++ e++ +LAkklgL+ rqV vWFqNrRa++k
Cucsa.339580.2 4 VQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 48
689*****************************************9 PP
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| 2 | HD-ZIP_I/II | 117.2 | 9.6e-38 | 4 | 86 | 11 | 93 |
HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
v++LE++Feee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd l+++ +++ ke++ L++e+++
Cucsa.339580.2 4 VQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDLLVSNYDSIVKENAVLKSEVAS 86
89****************************************************************************99875 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 212 aa
Download sequence Send
to blast |
MLKVQMLEKN FEEENKLEPE RKSQLAKKLG LQPRQVAVWF QNRRARWKTK QLERDYDVLK 60
ASYDLLVSNY DSIVKENAVL KSEVASLTEK CLAKELGGGE ATIPSITSTS ELLLADITNI 120
SVPHSGRKAE DRLSSGSDSS AVIDDNCPQL IDSGDSYFPN IEYPQCSNLP NGLQMEDDDT 180
NDNCNYLFSD MFAATNQQNQ EGRPPALWAW P*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Arce AL,Chan RL
A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
Plant Physiol., 2017. 175(3): p. 1238-1253
[PMID:28956754]
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