PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.338700.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 28495 Da PI: 9.3998 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.9 | 2.4e-33 | 16 | 98 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++k +ekewyf++ rd+ky+tg r+nrat++gyWkatgkdke+l+ +++ vg+kktLvfykgrap+g+k++Wvmheyrl Cucsa.338700.3 16 RAKMGEKEWYFYCVRDRKYPTGLRTNRATEAGYWKATGKDKEILKGrnhnNNNIVGMKKTLVFYKGRAPRGHKSNWVMHEYRL 98 5567899*************************************9866656666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.735 | 1 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.68E-39 | 13 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-16 | 14 | 98 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLRSMGFLVL IVLAGRAKMG EKEWYFYCVR DRKYPTGLRT NRATEAGYWK ATGKDKEILK 60 GRNHNNNNIV GMKKTLVFYK GRAPRGHKSN WVMHEYRLHS NNNHSSSSSS SPYSQHHPLP 120 LPLPTTSSQK EWVICRIFQK SESSMGKKGN DEITMAESSS SSSLHALPPL TDSDPALHVT 180 CFSNSTEMEP EDFHYLQNHD AFFWLPDFQD IKQTQIFSSS TTTTNKPSNY DHYQLHPSPP 240 PPPPSLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-31 | 12 | 144 | 64 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-124 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-124 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136698.1 | 1e-142 | PREDICTED: NAC domain-containing protein 100 isoform X1 | ||||
Swissprot | Q9FLJ2 | 3e-54 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0A0LF85 | 1e-141 | A0A0A0LF85_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136698.1 | 1e-141 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 2e-52 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.338700.3 |
Publications ? help Back to Top | |||
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