PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.338700.2

Common Name

Csa_3G824990, LOC101214698

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 284aa MW: 32360.1 Da PI: 7.4738

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.338700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.5	3.8e-55	3	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv +++++ +i+evd++k+ePwdLp ++k +ekewyf++ rd+ky+tg r+nrat++gyWkatgkdke+l+ Cucsa.338700.2 3 LPPGFRFHPTDEELITHYLSPKVLSSTFSS-PAIAEVDLNKCEPWDLPGRAKMGEKEWYFYCVRDRKYPTGLRTNRATEAGYWKATGKDKEILKG 96 79***********************999.78***********99999************************************98 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kktLvfykgrap+g+k++Wvmheyrl Cucsa.338700.2 97 rnhnNNNIVGMKKTLVFYKGRAPRGHKSNWVMHEYRL 133 66656666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-62	2	174	IPR003441	NAC domain
PROSITE profile	PS51005	59.243	3	174	IPR003441	NAC domain
Pfam	PF02365	5.1E-29	4	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MELPPGFRFH PTDEELITHY LSPKVLSSTF SSPAIAEVDL NKCEPWDLPG RAKMGEKEWY 60 FYCVRDRKYP TGLRTNRATE AGYWKATGKD KEILKGRNHN NNNIVGMKKT LVFYKGRAPR 120 GHKSNWVMHE YRLHSNNNHS SSSSSSPYSQ HHPLPLPLPT TSSQEWVICR IFQKSESSMG 180 KKGNDEITMA ESSSSSSLHA LPPLTDSDPA LHVTCFSNST EMEPEDFHYL QNHDAFFWLP 240 DFQDIKQTQI FSSSTTTTNK PSNYDHYQLH PSPPPPPPSL WNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-52	1	178	18	172	NAC domain-containing protein 19
3swm_B	1e-52	1	178	18	172	NAC domain-containing protein 19
3swm_C	1e-52	1	178	18	172	NAC domain-containing protein 19
3swm_D	1e-52	1	178	18	172	NAC domain-containing protein 19
3swp_A	1e-52	1	178	18	172	NAC domain-containing protein 19
3swp_B	1e-52	1	178	18	172	NAC domain-containing protein 19
3swp_C	1e-52	1	178	18	172	NAC domain-containing protein 19
3swp_D	1e-52	1	178	18	172	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	1e-114	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	1e-114	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652233.1	0.0	PREDICTED: NAC domain-containing protein 100 isoform X2
Swissprot	Q9FLJ2	7e-87	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0A0LF85	1e-177	A0A0A0LF85_CUCSA; Uncharacterized protein
STRING	XP_004136698.1	1e-178	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	6e-82	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Cucsa.338700.2
Entrez Gene	101214698

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]