PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.338170.1
Common NameCsa_3G822440, LOC101206434
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 433aa    MW: 47487 Da    PI: 8.849
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.338170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-1773132155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Cucsa.338170.1  73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 132
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1773141IPR016177DNA-binding domain
PfamPF008471.5E-1373132IPR001471AP2/ERF domain
PROSITE profilePS5103220.07374140IPR001471AP2/ERF domain
SMARTSM003806.5E-2674146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1574141IPR001471AP2/ERF domain
PRINTSPR003674.3E-57586IPR001471AP2/ERF domain
PRINTSPR003674.3E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MASSSSDPGF KHEPGACSTA AAGRGTAESS EVVMANDQLL LYRGLKKAKK ERGCTAKERI  60
SKMPPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDEEEAAA  120
RAYDLAALKY WGPGTLINFP VTDYTRDLEE MQNVSREEYL ASLRRKSSGF SRGISKYRGL  180
SSRWDPSFGR MPGPDYVSSI NYGAGDDQAT ESEFVHNFCI ERKIDLTSHI KWWGPNKSRT  240
ASAGSKSSEE DKNSCVGEVG SELKALGQTT RPTEPYEMPC LGTSGVKKAA SKVSALSILS  300
RSAAYKSLQE KALKLQETNN ENDENENKNT VNKIDHGKVV ETPTTSHGGG DPSERYGVTF  360
GTSGGLPLQR NMFPLTPFLT APLLSSYNTV EPLGDPIHWT SLVSVLPTGL SRTAEVTKTE  420
TSSTYTLFRP EE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136666.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-176AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0A0LCL80.0A0A0A0LCL8_CUCSA; Uncharacterized protein
STRINGXP_004159636.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-155AP2 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]